But OS X and Linux do both work fine with HTML and completely don't recognise EXE files, which was my objection to compiling the Flash into an EXE.
Keep the layout "nicely organised" like you say. For example, just have "index.html" as the only file in the root.
That's great for Mac and Windows users, but doesn't help on other OS. These days, even some TVs can handle Flash and HTML. They're mostly Linux based.
AFAIK, Autorun was completely dropped by Apple with OS X because of the big problem they had with viruses.
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